SNP Profiles of OC 61 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	GG	GG	CT	TT	AA	CC	GT	CT	AT	AA	TT	AA	CT
1._GC-05-039-1-39	TT	AA	GG	CT	TT	AA	CC	TT	CT	AA	AA	TT	AG	TT
2._GC-05-039-1-39	TT	AA	GG	CT	TT	AA	CC	TT	CT	AA	AA	TT	AG	TT
3._OC_61_[VEN]	TT	AA	GG	CT	TT	AA	CC	TT	CT	AA	AA	TT	AG	TT
4._OC_61_[VEN]	TT	AA	GG	CT	TT	AA	CC	TT	CT	AA	AA	TT	AG	TT
5._GC-05-040-1-40	TT	AA	GG	CT	TT	AA	CC	TT	CT	AA	AA	TT	AG	TT
6._GC-05-040-1-40	TT	AA	GG	CT	TT	AA	CC	TT	CT	AA	AA	TT	AG	TT
7._GC-05-040-1-40	TT	AA	GG	CT	TT	AA	CC	TT	CT	AA	AA	TT	AG	TT
8._GC-05-040-1-40	TT	AA	GG	CT	TT	AA	CC	TT	CT	AA	AA	TT	AG	TT
9._GC-05-039-1-39	TT	AA	GG	CT	TT	AA	CC	TT	CT	AA	AA	TT	AG	TT
10._GC-05-039-1-39	TT	AA	GG	CT	TT	AA	CC	TT	CT	AA	AA	TT	AG	TT
11._GC-05-039-1-39	TT	AA	GG	CT	TT	AA	CC	TT	CT	AA	AA	TT	AG	TT
12._OC_61_[VEN]	TT	AA	GG	CT	TT	AA	CC	TT	CT	AA	AA	TT	AG	TT
13._OC_61_[VEN]	TT	AA	GG	CT	TT	AA	CC	TT	CT	AA	AA	TT	AG	TT
14._OC_61_[VEN]	TT	AA	GG	CT	TT	AA	CC	TT	CT	AA	AA	TT	AG	TT
15._OC_61_[VEN]	TT	AA	GG	CT	TT	AA	CC	TT	CT	AA	AA	TT	AG	TT
16._OC_61_[VEN]	TT	AA	GG	CT	TT	AA	CC	TT	CT	AA	AA	TT	AG	TT
17._OC_61_[VEN]	TT	AA	GG	CT	TT	AA	CC	TT	CT	AA	AA	TT	AG	TT
18._OC_61_[VEN]	TT	AA	GG	CT	TT	AA	CC	TT	CT	AA	AA	TT	AG	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	TT	CC	CG	TT	AG	CT	CC	CG	GT	CC	CC	AG
1._GC-05-039-1-39	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC	AA
2._GC-05-039-1-39	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC	AA
3._OC_61_[VEN]	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC	AA
4._OC_61_[VEN]	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC	AA
5._GC-05-040-1-40	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC	AA
6._GC-05-040-1-40	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC	AA
7._GC-05-040-1-40	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC	AA
8._GC-05-040-1-40	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC	AA
9._GC-05-039-1-39	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC	AA
10._GC-05-039-1-39	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC	AA
11._GC-05-039-1-39	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC	AA
12._OC_61_[VEN]	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC	AA
13._OC_61_[VEN]	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC	AA
14._OC_61_[VEN]	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC	AA
15._OC_61_[VEN]	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC	AA
16._OC_61_[VEN]	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC	AA
17._OC_61_[VEN]	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC	AA
18._OC_61_[VEN]	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC	AA

	29	30	31	32	33	34	35	36	37	38
_Input profile	GG	AT	CT	GG	AC	TT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
1._GC-05-039-1-39	GG	AA	CC	AG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X
2._GC-05-039-1-39	GG	AA	CC	AG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X
3._OC_61_[VEN]	GG	AA	CC	AG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X
4._OC_61_[VEN]	GG	AA	CC	AG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X
5._GC-05-040-1-40	GG	AA	CC	AG	AA	CC	TT	CC	TT	GG	X_X	X_X	X_X	X_X
6._GC-05-040-1-40	GG	AA	CC	AG	AA	CC	TT	CC	TT	GG	X_X	X_X	X_X	X_X
7._GC-05-040-1-40	GG	AA	CC	AG	AA	CC	TT	CC	TT	GG	X_X	X_X	X_X	X_X
8._GC-05-040-1-40	GG	AA	CC	AG	AA	CC	TT	CC	TT	GG	X_X	X_X	X_X	X_X
9._GC-05-039-1-39	GG	AA	CC	AG	AA	CC	TT	CC	TT	GG	X_X	X_X	X_X	X_X
10._GC-05-039-1-39	GG	AA	CC	AG	AA	CC	TT	CC	TT	GG	X_X	X_X	X_X	X_X
11._GC-05-039-1-39	GG	AA	CC	AG	AA	CC	TT	CC	TT	GG	X_X	X_X	X_X	X_X
12._OC_61_[VEN]	GG	AA	CC	AG	AA	CC	TT	CC	TT	GG	X_X	X_X	X_X	X_X
13._OC_61_[VEN]	GG	AA	CC	AG	AA	CC	TT	CC	TT	GG	X_X	X_X	X_X	X_X
14._OC_61_[VEN]	GG	AA	CC	AG	AA	CC	TT	CC	TT	GG	X_X	X_X	X_X	X_X
15._OC_61_[VEN]	GG	AA	CC	AG	AA	CC	TT	CC	TT	GG	X_X	X_X	X_X	X_X
16._OC_61_[VEN]	GG	AA	CC	AG	AA	CC	TT	CC	TT	GG	X_X	X_X	X_X	X_X
17._OC_61_[VEN]	GG	AA	CC	AG	AA	CC	TT	CC	TT	GG	X_X	X_X	X_X	X_X
18._OC_61_[VEN]	GG	AA	CC	AG	AA	CC	TT	CC	TT	GG	X_X	X_X	X_X	X_X

Input profile: OC_61_[VEN]

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A C317 T1

Dapeng Zhang, 2016

1._OC_61_[VEN] GC-05-039-1-39

68.4 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

2._OC_61_[VEN] GC-05-039-1-39

68.4 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

3._OC_61_[VEN]

68.4 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5139 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

4._OC_61_[VEN]

68.4 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5139 1 > FP

Dapeng Zhang, 2016

5._OC_61_[VEN] GC-05-040-1-40

67.1 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

6._OC_61_[VEN] GC-05-040-1-40

67.1 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

7._OC_61_[VEN] GC-05-040-1-40

67.1 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

8._OC_61_[VEN] GC-05-040-1-40

67.1 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

9._OC_61_[VEN] GC-05-039-1-39

67.1 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP3

10._OC_61_[VEN] GC-05-039-1-39

67.1 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP2

11._OC_61_[VEN] GC-05-039-1-39

67.1 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

12._OC_61_[VEN]

67.1 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5140 5 > FP

Dapeng Zhang, 2016

13._OC_61_[VEN]

67.1 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5139 3 > FP

Dapeng Zhang, 2016

14._OC_61_[VEN]

67.1 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5139 4 > FP

Dapeng Zhang, 2016

15._OC_61_[VEN]

67.1 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5139 5 > FP

Dapeng Zhang, 2016

16._OC_61_[VEN]

67.1 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5140 1 > FP

Dapeng Zhang, 2016

17._OC_61_[VEN]

67.1 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5140 3 > FP

Dapeng Zhang, 2016

18._OC_61_[VEN]

67.1 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5140 4 > FP

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP193	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25